I'm relatively certain that the Arrival ends the same way regardless of what you choose. Either way at the beginning of ME3, you have been stripped of your rank and await trial. I would presume that the only difference is how the Batarians feel about you.
"In our youth, we lacked the maturity, the decency to create gods better than ourselves so that we might have something to aspire to. Instead we are left with a host of deities who were violent, narcissistic, vengeful bullies who reflected our own values. Our gods could have been anything we could imagine, and all we were capable of manifesting were gods who shared the worst of our natures."-Me
"Atheism leaves a man to sense, to philosophy, to natural piety, to laws, to reputation; all of which may be guides to an outward moral virtue, even if religion vanished; but religious superstition dismounts all these and erects an absolute monarchy in the minds of men." – Francis Bacon
"Atheism leaves a man to sense, to philosophy, to natural piety, to laws, to reputation; all of which may be guides to an outward moral virtue, even if religion vanished; but religious superstition dismounts all these and erects an absolute monarchy in the minds of men." – Francis Bacon