Well if you collide two electrons hard enough there would be protons indeed, but also the same number of antiprotons. How we got an asymmetry between matter and antimatter such that net protons remain, is the so-called question of baryogenesis. A famous russian guy, Sakharov, worked out the necessary preconditions for that to happen in the 60s or so.
The fool hath said in his heart, There is a God. They are corrupt, they have done abominable works, there is none that doeth good.
Psalm 14, KJV revised edition