Sure my friend I will try to break it into paragraphs. I just get carried away typing sometimes. I apologize. But to the points at hand:
Yes a miracle is something that CANNOT be naturally performed WITHOUT the help of God. Jesus pbuh born to a virgin woman can't be naturally done. But with God's power and will of His creature, the blessed virgin Mary giving birth to His messenger Jesus pbuh, is a miracle. The unnatural came into being only because God willed it to be. The creation of Adam pbuh. A hollow, lifeless statue similar to that of pottery made of clay from different colors and forms of earth mixed with water, was brought to life by God. Once alive the being Adam pbuh was no longer hollow, but had bones, blood, muscles, organs and all things different from when he was lifeless. These are miracles. Unnatural actions coming into being only by the power and will of God alone.
Notice how precise the numbers are in the Qur'an. Like u say around 6000 verses. But the exact # of verses is 6236 which when used gives a more precise calculation. For instance the #19. Now why does Allah use this #? We don't know. Perhaps because it consist of the lowest & highest whole # value of single digits 1 and 9. Or in a sense "The beginning and end of single digit value". The #19 is too large a #to just randomly take a chance. If u do the math 19 is a less than 5% chance. In 74:30 of the Qur'an Allah says there are nineteen angels guarding Hell. In the very next verse it details why this # was mentioned. It says "This will give the People of the Book (Jews & Christians) certainty, and also increase the faith of the Believers (Muslims). But to those who disbelieve & have diseases in their hearts will just deride the information. Now to get deeper on u here. The verse that states this consists of 57 Arabic words or 19x3. The Arabic words in this chapter prior to this verse are 95 or 19x5. The total Arabic words in the first 19 verses of this chapter are also 57 or 19x3. If u count all of the Arabic letters just before the mention of the word "nineteen" u get 361 or 19x19. So all of these 19's mentioned near the word nineteen is just a coincidence? I don't think so. Chapter 96 was the first revelation of the Qur'an to the Prophet Muhammad pbuh from Allah through the Angel Gabriel pbuh. The first 5 verse which he received at one time consist of 19 words which consist of 76 letters or 19x4. The entire chapter has 19 verses and consists of 285 letters or 19x15. Also being 114 chapters of the Qur'an or 19x6, chapter 96 is the first of the last 19 chapters. 114-95=19. The 72nd ch. also has 285 words or 19x15 and the chapter ends by saying "Allah has taken into account everything NUMERICALLY" If u take the last word of every chapter's verse and add them together u get 114 or 19x6, which is also the total amount of chapters of the Qur'an. Ch. 50 is Qaf which is English letter "Q". If u count the letter Qaf in that entire chapter u get 57 or 19x3. In 3:59 (the 7th time each name is mentioned) this is where Allah says Jesus is like Adam. Meaning they are both His creations. The next verse they are both mentioned together is in Ch.19 which is the 19th time Adam pbuh is mentioned & the 19th time Jesus pbuh is mentioned. If u count the verses between the first time they are both mentioned together up until this time u get 1957 verses or 19x103. Also if u count the verse #s up to the 19th where Jesus pbuh is mentioned. Add all verse #s and u get the sum 1957 or 19x103. So all of these show a divine art of strategic planning, too precise and numerous with a less than 5% # to be just a coincidence.
Shakespeare was a human being. Very gifted? yes. But he still was only a human being. Plus the entire bible, Old & New Testaments, are not the complete word of God alone. Mankind has added verses to the bible claiming it to be God's complete word. In Jeremiah 8:8 It clearly says "How can you say we are wise and have the law of The Lord when the lying pens of the scribes have falsified it?" This clearly states there are false entries from mankind throughout the entire Bible. This is one of the Qur'an's purposes. As the complete word of God alone, it confirms the truth revealed from God to mankind in the Bible, but it also corrects the Bible's falsehood. So since Shakespeare, was apparently a human, he, nor any other human being could produce even a single chapter like that of the Qur'an. So u can't compare mankind's word with God's word.
No matter what Qur'anic interpretation is used, the translation may be different words, but the Arabic is TOTALLY UNCHANGED, and has been for over 1400 year since the Qur'an was first revealed. For example The Arabic attribute of God Ar-Rahman is translated as The Most Gracious. But in other translations is translated as The Merciful Benefactor, and also as The Beneficent. So all of these translations have synonymous meanings with each other and traced back to the original Arabic word Ar-Rahman which in Arabic means merciful, gracious, kind in mercy etc.
Again u miss my point with the word day. Yaum is the Arabic word for day in the SINGULAR FORM. This is the word used 365 times in the Qur'an. There are other terms the word is used with such as "Yaumal Qiyamah" or The Day of Resurrection. Also the term and chapter title 101, Al-Qaari'ah means the Day of noise and clamor. So if reading just the English translation u see the word "day" here but it is in a different Arabic wording than yaum. So it would not pertain to this. So again the word yaum by itself in SINGULAR FORM, is used exactly 365 times.
Sure God allows it. This is why it works. As do all things. Science, gravity, time and all things we have knowledge of, and of things we don't. They all work because God willed it that way. Just as u can't see hydrogen and oxygen, but u can breathe them in so u know they're there. U also know that if u mix them together, 2 separate gases, they form to make water which is a liquid. God allowed this to take place. Because all gases that mix don't necessarily have to make a liquid, but if God willed it as so, then it will be. U can't see gravity but u know it exists lest we would float off into space. God is The One who taught mankind of the knowledge of the things He created and how they work. Numbers (mathematics) and science are 2 of the greatest forms of knowledge to have. Because no matter what side of the world u come from. No matter what language u speak, or religious background u come from.... 1+1=2. Fire is hot, and ice is cold. The Earth is spinning and revolving around the sun even though we can't feel it moving. These are all things among millions of others in which God has allowed and blessed us to learn about.
I never said earthquakes don't happen. They happen all the time. The Qur'an speaks of The Convulsion that will happen all around the world on The Day of Judgment and mankind will fear and say "What is wrong with her (The Earth)". But with the number of quakes that happen around the world, if mountains were not on Earth, imagine how much more frequently they would happen everywhere. The mountains deeply rooted into the levels of crust and mantle of the Earth, have been compared to nails pegged deeply between 2 stacked boards to keep them from slipping apart. So if mountains weren't here then we would have earthquakes everyday in every place all over the world.
Here is the SCIENTIFIC NOT ISLAMIC LINK to the Golden Ratio.
http://www.goldennumber.net/golden-ratio-of-earth/
Finally for the embryo. The Qur'an lists the embryo as Al-Alaq or the leech like clot. Scientist today have verified the way the embryo clings in the mother's womb is like that of a leech. Allah also says the embryo resembles a chewed object. Look at this link to view for urself
http://4.bp.blogspot.com/-FS6fKraSVOs/Tp..._Leech.png. With no microscopes, x-rays or sonograms and an embryo the size of a single grain of rice, what human being in ancient Greece or 7th century Arabia would have this precise knowledge of what a tiny embryo hidden in a mother's womb would look like except for The One Who created it? Also Allah lists the stages of embryonic progression in The Qur'an 23:14 "Then We made the sperm into a clot of congealed blood; then of that clot We made a (foetus) lump; then we made out of that lump bones and clothed the bones with flesh; then we developed out of it another creature. So blessed be Allah, the best to create!"
So all of these show The Qur'an non-coincidental but the true word of God Allah, in which He has given us signs that we are verifying as true with our knowledge and technology today.