What is logic?

[SuperSentient]

Atheists surely do not believe in any deity but at the same time they do believe in a myriad of dogmas.

That is all atheism is, the absence of a belief in a deity, it doesn't come with other beliefs.

Forget about the religion which I am not interested in and rather tell me about the story that science contradict God existence.

There is not one explanation in science that involves any god, no god in a test tube. The past christian church once believed that the earth was central to the universe (including geocentric universe) and that the earth was about 6000 years old, it turns out that this wasn't true and lost to science. The current understanding shows humans to be insignificant and no evidence of a universe geared to us.

What about the thousand of other NDEs?

Again, the science is pretty consistent behind it, more NDEs occurring doesn't provide any more evidence for a soul. Just accept it, the soul is religious dogma, nothing more.

Were their dead brain stimulated?

How the hell can you stimulate a dead brain?

The NDE (near death experiences) experiences didn't occur with dead brains, no evidence to suggest that. 

So now some idiot come up with the idea that Eben had an NDE because of a coma.
The idiot that came up with this garbage contradict himself.
He should have said that all those who had an NDE had a coma but even in this case he would have
been a double idiot as the NDEs come after a dead brain.

Not an idiot, its logic and science. It always wins, your beliefs lose to logic again. 

What science will come up with is how the system works which is that the consciousness 

separate from the dead body.

Neuroscience and the logic you talk about.

No matter how many times you repeat yourself, your dogmatic beliefs aren't going to get any more true. They will continue to remain in the realm of religion but loses to science and logic.