It's not that one religion is entirely true and the others entirely wrong, a Christian can agree with a Muslim or a Jew on many points and disagree on a few other points. With atheism/naturalism you have more of an absolutest view where you are 100% right and everyone else is 100% wrong about everything they believe there isn't a middle ground where you can agree on certain details. A believer can acknowledge/accept the scientific premise that when you can't know something for certain based on physical data then there is some room for doubt in your specific faith, but there has always been room for that anyway it's not a purely post Enlightenment occurrence or religion yielding to the pressure from science. Science is perfectly compatible with God of course seeing as for the most part it addresses as separate issue regarding the mechanics of how physical observable processes operate. Science doesn't and can't explain where why all these physical processes and laws of physics exist or where they came from to begin with however.
Come all ye faithful joyful and triumphant.